Databases

ABG: Directory of 3D structures of antibodies AfCS-Nature Signaling Gateway Comprehensive resource for information on cell signaling, including facts about the proteins involved in that process BindingDB Database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules. BMCD Biological Macromolecule Crystallization BRENDA The Comprehensive Enzyme Information System CAZy Carbohydrate-Active enZYmes CCDC Cambridge Crystallographic Data Centre (small molecules) CoSSMos RNA Characterization of Secondary Structure Motifs (RNA CoSSMos) database. This tool allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structure motifs such as mismatches, (a)symmetric internal loops, hairpin loops, and bulge loops. Database of Macromolecular Movements Describes the motions that occur in proteins and other macromolecules, particularly using movies EM DataBank The unified data resource for CryoEM ENZYME Enzyme Nomenclature Entrez NCBI databases ExPASy Molecular Biology server GeneCards Database on human genes, proteins and diseases GenBank Nucleotide sequences HIV Protease Database Human Mitochondrial Protein Database Comprehensive data compiled from various resources on mitochondrial and human nuclear encoded proteins involved in mitochondrial biogenesis and function IEDB The Immune Epitope Database contains data related to antibody and T cell epitopes for humans, non-human primates, rodents, and other animal species. IMGT International ImMunoGeneTics Database Klotho Biochemical Compounds Declarative Database

LS-SNP A web tool for genome-wide annotation of human SNPs. The current version, LS-SNP/PDB, provides information useful for identifying amino-acid changing SNPs (nsSNPs) that are most likely to have an impact on biological function. Membrane Protein Data Bank A relational database with select structural and functional information on membrane proteins and peptides MEROPS Peptidase Database Metalloprotein Database and Browser ModBase A database of comparative protein structure models NDB Nucleic Acid Database OCA A browser-database for structure/function PDB at a Glance Classification of the structures in the PDB PDBbind Collecting experimentally determined binding affinity data exclusively for all types of biomolecular complexes in the Protein Data Bank, including protein-small molecule, nucleic acid-small molecule, protein-protein, and protein-nucleic acid complexes. PDBLite Simple PDB search for students and educators Pfam The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models. PROMISE The Prosthetic groups and Metal Ions in Protein Active Sites Database ProNIT Thermodynamic Database for Protein-Nucleic Acid Interactions Proteopedia Collaborative 3D encyclopedia of proteins and other molecules ProTherm Thermodynamic Database for Proteins and Mutants RELIBase Structural data about receptor/ligand complexes SWISS-MODEL Repository A database of annotated protein structure homology models UniProtKB A comprehensive, high-quality, and freely accessible resource of protein sequence and functional information. Vitamin D Nuclear Receptor Site Zinc A free database of commercially-available compounds for virtual screening.

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