5O6A

The cryo-EM structure of Tick-borne encephalitis virus mature particle


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.9 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation  3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of tick-borne encephalitis virus and its neutralization by a monoclonal antibody.

Fuzik, T.Formanova, P.Ruzek, D.Niedrig, M.Plevka, P.

(2018) Nat Commun 9: 436


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule Chains Sequence Length Organism Details
Envelope protein
A, B, C
496 Tick-borne encephalitis virus (strain Hypr) EC: 3.6.1.15, 2.1.1.56, 2.1.1.57, 3.4.21.91, 3.6.4.13, 2.7.7.48
Find proteins for Q01299 (Tick-borne encephalitis virus (strain Hypr))
Go to UniProtKB:  Q01299
Entity ID: 2
Molecule Chains Sequence Length Organism Details
Small envelope protein M
D, E, F
75 Tick-borne encephalitis virus (strain Hypr) EC: 3.6.1.15, 2.1.1.56, 2.1.1.57, 3.4.21.91, 3.6.4.13, 2.7.7.48
Find proteins for Q01299 (Tick-borne encephalitis virus (strain Hypr))
Go to UniProtKB:  Q01299
Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.9 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software Name Purpose
REFMAC refinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-06-06 
  • Released Date: 2018-02-07 
  • Deposition Author(s): Fuzik, T., Plevka, P.

Funding Organization Country Grant Number
European Research Council 355855
European Molecular Biology Organization Germany IG3041
Czech Science Foundation Czech Republic 17-02196S

Revision History 

  • Version 1.0: 2018-02-07
    Type: Initial release