5X27

Crystal structure of EGFR 696-1022 L858R in complex with SKLB(5)

  • Classification: TRANSFERASE
  • Organism(s): Homo sapiens
  • Expression System: Spodoptera frugiperda
  • Mutation(s): 

  • Deposited: 2017-01-31 Released: 2018-02-07 
  • Deposition Author(s): Yun, C.H.
  • Funding Organization(s): National Science Foundation of China; National Basic Research Program of China; Ministry of Science and Technology of China 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.952 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.203 

wwPDB Validation  3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural insights into drug development strategy targeting EGFR T790M/C797S

Zhu, S.J.Zhao, P.Yang, J.Ma, R.Yan, X.E.Yang, S.Y.Yang, J.W.Yun, C.H.

(2018) Oncotarget --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule Chains Sequence Length Organism Details
Epidermal growth factor receptor
A
327 Homo sapiens Gene Names: EGFR (ERBB, ERBB1, HER1)
EC: 2.7.10.1
Find proteins for P00533 (Homo sapiens)
Go to Gene View: EGFR
Go to UniProtKB:  P00533
Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
7XR
Query on 7XR

Download SDF File 
Download CCD File 
A
9-cyclopentyl-N2-[4-(4-methylpiperazin-1-yl)phenyl]-N8-phenyl-purine-2,8-diamine
C27 H32 N8
QPOURHROVVCOHC-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.952 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.203 
  • Space Group: I 2 3
Unit Cell:
Length (Å) Angle (°)
a = 145.384 α = 90.00
b = 145.384 β = 90.00
c = 145.384 γ = 90.00
Software Package:
Software Name Purpose
HKL-3000 data scaling
PHASER phasing
HKL-3000 data reduction
PHENIX refinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-01-31 
  • Released Date: 2018-02-07 
  • Deposition Author(s): Yun, C.H.

Funding Organization Country Grant Number
National Science Foundation of China China 31270769
National Basic Research Program of China China 2012CB917202
Ministry of Science and Technology of China China NCET-12-0013

Revision History 

  • Version 1.0: 2018-02-07
    Type: Initial release
  • Version 1.1: 2018-02-21
    Type: Database references